Detailed information of SNP:
|
SNP ID:
sf0922416246(Gbrowse)
Chromosome: chr09 Position: 22416246 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 60.31% | 39.69% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 495 | 1.62% | 98.38% |
| Aus | 27 | 62.96% | 37.04% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 333 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922416246 | C->A | INTERGENIC | None |