Detailed information of SNP:
|
SNP ID:
sf0922416641(Gbrowse)
Chromosome: chr09 Position: 22416641 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 83.43% | 16.57% |
| All Indica | 798 | 71.55% | 28.45% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 66.04% | 33.96% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922416641 | T->C | INTERGENIC | None |