Detailed information of SNP:
|
SNP ID:
sf0922418552(Gbrowse)
Chromosome: chr09 Position: 22418552 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 73.67% | 26.33% |
| All Indica | 791 | 54.74% | 45.26% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 372 | 51.88% | 48.12% |
| Indica II | 212 | 57.08% | 42.92% |
| Indica Intermediate | 207 | 57.49% | 42.51% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922418552 | C->T | LOC_Os09g39050(LOC_Os09g39050.1) | Non-Synonymous SNP |