Detailed information of SNP:
|
SNP ID:
sf0922421277(Gbrowse)
Chromosome: chr09 Position: 22421277 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1292 | 67.18% | 32.82% |
| All Indica | 682 | 47.80% | 52.20% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 60 | 20.00% | 80.00% |
| Indica I | 314 | 48.09% | 51.91% |
| Indica II | 179 | 38.55% | 61.45% |
| Indica Intermediate | 189 | 56.08% | 43.92% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922421277 | A->T | LOC_Os09g39060(LOC_Os09g39060.1) | INTRON |