Detailed information of SNP:
|
SNP ID:
sf0922425342(Gbrowse)
Chromosome: chr09 Position: 22425342 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1173 | 60.70% | 39.30% |
| All Indica | 604 | 26.16% | 73.84% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 27 | 62.96% | 37.04% |
| Indica I | 260 | 29.23% | 70.77% |
| Indica II | 197 | 20.30% | 79.70% |
| Indica Intermediate | 147 | 28.57% | 71.43% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 33 | 84.85% | 15.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922425342 | C->A | INTERGENIC | None |