Detailed information of SNP:
|
SNP ID:
sf0922427357(Gbrowse)
Chromosome: chr09 Position: 22427357 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 82.87% | 17.13% |
| All Indica | 796 | 71.23% | 28.77% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 67.11% | 32.89% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 210 | 64.29% | 35.71% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922427357 | T->G | LOC_Os09g39070(LOC_Os09g39070.1) | INTRON |