Detailed information of SNP:
|
SNP ID:
sf0922427539(Gbrowse)
Chromosome: chr09 Position: 22427539 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 79.06% | 20.94% |
| All Indica | 794 | 65.11% | 34.89% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 54.01% | 45.99% |
| Indica II | 209 | 86.60% | 13.40% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922427539 | C->T | LOC_Os09g39070(LOC_Os09g39070.1) | INTRON |