Detailed information of SNP:
|
SNP ID:
sf0922427636(Gbrowse)
Chromosome: chr09 Position: 22427636 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 59.87% | 40.13% |
| All Indica | 795 | 36.73% | 63.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 373 | 45.84% | 54.16% |
| Indica II | 212 | 17.92% | 82.08% |
| Indica Intermediate | 210 | 39.52% | 60.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922427636 | C->T | LOC_Os09g39070(LOC_Os09g39070.1) | INTRON |