Detailed information of SNP:
|
SNP ID:
sf0922435492(Gbrowse)
Chromosome: chr09 Position: 22435492 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 54.59% | 45.41% |
| All Indica | 743 | 96.64% | 3.36% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 183 | 91.80% | 8.20% |
| Indica Intermediate | 186 | 96.24% | 3.76% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922435492 | T->C | INTERGENIC | None |