Detailed information of SNP:
|
SNP ID:
sf0922435879(Gbrowse)
Chromosome: chr09 Position: 22435879 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 54.38% | 45.62% |
| All Indica | 740 | 96.62% | 3.38% |
| All Japonica | 494 | 0.81% | 99.19% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 181 | 92.27% | 7.73% |
| Indica Intermediate | 187 | 95.19% | 4.81% |
| Temperate Japonica | 332 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922435879 | C->A | INTERGENIC | None |