Detailed information of SNP:
|
SNP ID:
sf0922436133(Gbrowse)
Chromosome: chr09 Position: 22436133 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1331 | 65.59% | 34.41% |
| All Indica | 720 | 38.89% | 61.11% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 338 | 32.84% | 67.16% |
| Indica II | 198 | 37.88% | 62.12% |
| Indica Intermediate | 184 | 51.09% | 48.91% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922436133 | T->C | INTERGENIC | None |