Detailed information of SNP:
|
SNP ID:
sf0922436136(Gbrowse)
Chromosome: chr09 Position: 22436136 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 69.25% | 30.75% |
| All Indica | 762 | 45.93% | 54.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 361 | 41.55% | 58.45% |
| Indica II | 204 | 41.18% | 58.82% |
| Indica Intermediate | 197 | 58.88% | 41.12% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922436136 | G->T | INTERGENIC | None |