Detailed information of SNP:
|
SNP ID:
sf0922443740(Gbrowse)
Chromosome: chr09 Position: 22443740 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1227 | 85.66% | 14.34% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 311 | 47.91% | 52.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 208 | 30.29% | 69.71% |
| Tropical Japonica | 62 | 91.94% | 8.06% |
| Japonica Intermediate | 41 | 70.73% | 29.27% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922443740 | A->G | INTERGENIC | None |