Detailed information of SNP:
|
SNP ID:
sf0922445604(Gbrowse)
Chromosome: chr09 Position: 22445604 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 84.70% | 15.30% |
| All Indica | 798 | 79.95% | 20.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922445604 | G->T | LOC_Os09g39100(LOC_Os09g39100.1) | INTRON |