Detailed information of SNP:
|
SNP ID:
sf0922450950(Gbrowse)
Chromosome: chr09 Position: 22450950 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.19% | 42.81% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922450950 | T->C | LOC_Os09g39110(LOC_Os09g39110.1) | INTRON |