Detailed information of SNP:
|
SNP ID:
sf0922482376(Gbrowse)
Chromosome: chr09 Position: 22482376 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 56.60% | 43.40% |
| All Indica | 786 | 91.73% | 8.27% |
| All Japonica | 496 | 0.00% | 100.00% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 368 | 94.84% | 5.16% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922482376 | C->T | INTERGENIC | None |