Detailed information of SNP:
|
SNP ID:
sf0922484529(Gbrowse)
Chromosome: chr09 Position: 22484529 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 53.02% | 46.98% |
| All Indica | 778 | 91.00% | 9.00% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 61 | 21.31% | 78.69% |
| Indica I | 371 | 94.88% | 5.12% |
| Indica II | 199 | 80.90% | 19.10% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922484529 | C->T | INTERGENIC | None |