Detailed information of SNP:
|
SNP ID:
sf0922485708(Gbrowse)
Chromosome: chr09 Position: 22485708 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 56.16% | 43.84% |
| All Indica | 787 | 90.60% | 9.40% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 367 | 92.64% | 7.36% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922485708 | G->A | INTERGENIC | None |