Detailed information of SNP:
|
SNP ID:
sf0922485806(Gbrowse)
Chromosome: chr09 Position: 22485806 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1367 | 53.55% | 46.45% |
| All Indica | 748 | 88.10% | 11.90% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 341 | 89.74% | 10.26% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 195 | 88.72% | 11.28% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922485806 | G->A | INTERGENIC | None |