Detailed information of SNP:
|
SNP ID:
sf0922486099(Gbrowse)
Chromosome: chr09 Position: 22486099 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 56.73% | 43.27% |
| All Indica | 794 | 91.56% | 8.44% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 370 | 94.05% | 5.95% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922486099 | A->G | INTERGENIC | None |