Detailed information of SNP:
|
SNP ID:
sf0922486144(Gbrowse)
Chromosome: chr09 Position: 22486144 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 52.30% | 47.70% |
| All Indica | 794 | 83.75% | 16.25% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 212 | 71.23% | 28.77% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922486144 | A->C | INTERGENIC | None |