Detailed information of SNP:
|
SNP ID:
sf0922493610(Gbrowse)
Chromosome: chr09 Position: 22493610 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 81.83% | 18.17% |
| All Indica | 789 | 68.69% | 31.31% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 62.97% | 37.03% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 207 | 61.84% | 38.16% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922493610 | A->G | LOC_Os09g39170(LOC_Os09g39170.1) | INTRON |