Detailed information of SNP:
|
SNP ID:
sf0922495080(Gbrowse)
Chromosome: chr09 Position: 22495080 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 81.63% | 18.37% |
| All Indica | 795 | 68.68% | 31.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 63.17% | 36.83% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922495080 | A->G | INTERGENIC | None |