Detailed information of SNP:
|
SNP ID:
sf0922498478(Gbrowse)
Chromosome: chr09 Position: 22498478 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.20% | 37.80% |
| All Indica | 799 | 34.79% | 65.21% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 30.40% | 69.60% |
| Indica II | 213 | 27.23% | 72.77% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922498478 | G->C | INTERGENIC | None |