Detailed information of SNP:
|
SNP ID:
sf0922499521(Gbrowse)
Chromosome: chr09 Position: 22499521 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.99% | 49.01% |
| All Indica | 796 | 23.62% | 76.38% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 29.14% | 70.86% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 209 | 32.06% | 67.94% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922499521 | G->A | INTERGENIC | None |