Detailed information of SNP:
|
SNP ID:
sf0922500739(Gbrowse)
Chromosome: chr09 Position: 22500739 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 55.90% | 44.10% |
| All Indica | 797 | 88.33% | 11.67% |
| All Japonica | 495 | 0.20% | 99.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 333 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922500739 | T->C | INTERGENIC | None |