Detailed information of SNP:
|
SNP ID:
sf0922506370(Gbrowse)
Chromosome: chr09 Position: 22506370 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.52% | 17.48% |
| All Indica | 799 | 77.72% | 22.28% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 70.93% | 29.07% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922506370 | G->A | LOC_Os09g39180(LOC_Os09g39180.1) | INTRON |