Detailed information of SNP:
|
SNP ID:
sf0922541233(Gbrowse)
Chromosome: chr09 Position: 22541233 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 75.88% | 24.12% |
| All Indica | 799 | 65.71% | 34.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 12.70% | 87.30% |
| Indica I | 375 | 68.80% | 31.20% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922541233 | G->A | INTERGENIC | None |