Detailed information of SNP:
|
SNP ID:
sf0922557231(Gbrowse)
Chromosome: chr09 Position: 22557231 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 58.71% | 41.29% |
| All Indica | 793 | 29.51% | 70.49% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 32.53% | 67.47% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 208 | 42.31% | 57.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922557231 | A->T | INTERGENIC | None |