Detailed information of SNP:
|
SNP ID:
sf0922564735(Gbrowse)
Chromosome: chr09 Position: 22564735 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 82.33% | 17.67% |
| All Indica | 795 | 76.73% | 23.27% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 73.80% | 26.20% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922564735 | C->A | LOC_Os09g39260(LOC_Os09g39260.1) | Synonymous |