Detailed information of SNP:
|
SNP ID:
sf0922595345(Gbrowse)
Chromosome: chr09 Position: 22595345 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 51.66% | 48.34% |
| All Indica | 799 | 24.03% | 75.97% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 27.47% | 72.53% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922595345 | T->G | LOC_Os09g39310(LOC_Os09g39310.1) | INTRON |