Detailed information of SNP:
|
SNP ID:
sf0922613441(Gbrowse)
Chromosome: chr09 Position: 22613441 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 79.72% | 20.28% |
| All Indica | 794 | 66.12% | 33.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 32 | 90.62% | 9.38% |
| Indica I | 371 | 66.58% | 33.42% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922613441 | C->T | LOC_Os09g39330(LOC_Os09g39330.1) | INTRON |