Detailed information of SNP:
|
SNP ID:
sf0922633581(Gbrowse)
Chromosome: chr09 Position: 22633581 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 56.04% | 43.96% |
| All Indica | 796 | 24.50% | 75.50% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 27.54% | 72.46% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 209 | 34.93% | 65.07% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922633581 | G->A | INTERGENIC | None |