Detailed information of SNP:
|
SNP ID:
sf0922660986(Gbrowse)
Chromosome: chr09 Position: 22660986 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 74.72% | 25.28% |
| All Indica | 722 | 54.71% | 45.29% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 345 | 48.99% | 51.01% |
| Indica II | 192 | 52.60% | 47.40% |
| Indica Intermediate | 185 | 67.57% | 32.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922660986 | G->A | LOC_Os09g39410(LOC_Os09g39410.1) | INTRON |