Detailed information of SNP:
|
SNP ID:
sf0922675493(Gbrowse)
Chromosome: chr09 Position: 22675493 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 88.79% | 11.21% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 84.48% | 15.52% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922675493 | A->G | INTERGENIC | None |