Detailed information of SNP:
|
SNP ID:
sf0922730681(Gbrowse)
Chromosome: chr09 Position: 22730681 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 53.09% | 46.91% |
| All Indica | 774 | 91.47% | 8.53% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 362 | 91.71% | 8.29% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 206 | 91.26% | 8.74% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922730681 | G->A | INTERGENIC | None |