Detailed information of SNP:
|
SNP ID:
sf0922789459(Gbrowse)
Chromosome: chr09 Position: 22789459 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1366 | 60.10% | 39.90% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 17 | 58.82% | 41.18% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922789459 | C->T | INTERGENIC | None |