Detailed information of SNP:
|
SNP ID:
sf0922862982(Gbrowse)
Chromosome: chr09 Position: 22862982 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 66.24% | 33.76% |
| All Indica | 772 | 42.23% | 57.77% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 365 | 60.27% | 39.73% |
| Indica II | 205 | 20.00% | 80.00% |
| Indica Intermediate | 202 | 32.18% | 67.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922862982 | C->T | LOC_Os09g39880(LOC_Os09g39880.1) | INTRON |