Detailed information of SNP:
|
SNP ID:
sf0922881083(Gbrowse)
Chromosome: chr09 Position: 22881083 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1331 | 91.51% | 8.49% |
| All Indica | 713 | 84.29% | 15.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 328 | 82.62% | 17.38% |
| Indica II | 196 | 94.90% | 5.10% |
| Indica Intermediate | 189 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922881083 | T->G | INTERGENIC | None |