Detailed information of SNP:
|
SNP ID:
sf1000027798(Gbrowse)
Chromosome: chr10 Position: 27798 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 95.17% | 4.83% |
| All Indica | 787 | 97.71% | 2.29% |
| All Japonica | 481 | 91.27% | 8.73% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 368 | 98.10% | 1.90% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 322 | 92.86% | 7.14% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000027798 | C->T | LOC_Os10g01020(LOC_Os10g01020.1) | Non-Synonymous SNP |