Detailed information of SNP:
|
SNP ID:
sf1000045107(Gbrowse)
Chromosome: chr10 Position: 45107 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1356 | 93.88% | 6.12% |
| All Indica | 765 | 99.48% | 0.52% |
| All Japonica | 469 | 84.01% | 15.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 99.15% | 0.85% |
| Indica II | 206 | 99.51% | 0.49% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 96.69% | 3.31% |
| Tropical Japonica | 77 | 35.06% | 64.94% |
| Japonica Intermediate | 60 | 76.67% | 23.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000045107 | G->C | LOC_Os10g01044(LOC_Os10g01044.3) | UTR_3_PRIME |
| sf1000045107 | G->C | LOC_Os10g01044(LOC_Os10g01044.2) | UTR_3_PRIME |
| sf1000045107 | G->C | LOC_Os10g01044(LOC_Os10g01044.1) | UTR_3_PRIME |