Detailed information of SNP:
|
SNP ID:
sf1000046684(Gbrowse)
Chromosome: chr10 Position: 46684 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 72.09% | 27.91% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 27.16% | 72.84% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000046684 | C->T | LOC_Os10g01044(LOC_Os10g01044.3) | INTRON |
| sf1000046684 | C->T | LOC_Os10g01044(LOC_Os10g01044.2) | INTRON |
| sf1000046684 | C->T | LOC_Os10g01044(LOC_Os10g01044.1) | INTRON |