Detailed information of SNP:
|
SNP ID:
sf1000057548(Gbrowse)
Chromosome: chr10 Position: 57548 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 58.95% | 41.05% |
| All Indica | 798 | 35.21% | 64.79% |
| All Japonica | 484 | 97.11% | 2.89% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 42.67% | 57.33% |
| Indica II | 212 | 38.21% | 61.79% |
| Indica Intermediate | 211 | 18.96% | 81.04% |
| Temperate Japonica | 322 | 96.58% | 3.42% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000057548 | A->G | INTERGENIC | None |