Detailed information of SNP:
|
SNP ID:
sf1000060236(Gbrowse)
Chromosome: chr10 Position: 60236 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 72.32% | 27.68% |
| All Indica | 798 | 68.42% | 31.58% |
| All Japonica | 496 | 73.79% | 26.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 60.43% | 39.57% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000060236 | C->T | INTERGENIC | None |