Detailed information of SNP:
|
SNP ID:
sf1000072755(Gbrowse)
Chromosome: chr10 Position: 72755 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 57.73% | 42.27% |
| All Indica | 797 | 34.50% | 65.50% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 42.78% | 57.22% |
| Indica II | 212 | 36.79% | 63.21% |
| Indica Intermediate | 211 | 17.54% | 82.46% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000072755 | T->C | INTERGENIC | None |