Detailed information of SNP:
|
SNP ID:
sf1000079422(Gbrowse)
Chromosome: chr10 Position: 79422 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 71.59% | 28.41% |
| All Indica | 786 | 65.90% | 34.10% |
| All Japonica | 493 | 76.88% | 23.12% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 370 | 56.22% | 43.78% |
| Indica II | 207 | 66.18% | 33.82% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 90 | 22.22% | 77.78% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000079422 | C->T | INTERGENIC | None |