Detailed information of SNP:
|
SNP ID:
sf1000079430(Gbrowse)
Chromosome: chr10 Position: 79430 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 70.66% | 29.34% |
| All Indica | 791 | 67.64% | 32.36% |
| All Japonica | 496 | 75.40% | 24.60% |
| Aus | 60 | 66.67% | 33.33% |
| Indica I | 370 | 59.46% | 40.54% |
| Indica II | 211 | 64.93% | 35.07% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 93 | 18.28% | 81.72% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000079430 | G->A | INTERGENIC | None |