Detailed information of SNP:
|
SNP ID:
sf1000079974(Gbrowse)
Chromosome: chr10 Position: 79974 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 52.98% | 47.02% |
| All Indica | 773 | 31.44% | 68.56% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 351 | 38.46% | 61.54% |
| Indica II | 212 | 35.38% | 64.62% |
| Indica Intermediate | 210 | 15.71% | 84.29% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000079974 | T->C | LOC_Os10g01080(LOC_Os10g01080.1) | UTR_3_PRIME |