Detailed information of SNP:
|
SNP ID:
sf1000091195(Gbrowse)
Chromosome: chr10 Position: 91195 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 70.35% | 29.65% |
| All Indica | 792 | 65.53% | 34.47% |
| All Japonica | 497 | 73.04% | 26.96% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 55.61% | 44.39% |
| Indica II | 210 | 64.76% | 35.24% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000091195 | A->T | INTERGENIC | None |