Detailed information of SNP:
|
SNP ID:
sf1000092149(Gbrowse)
Chromosome: chr10 Position: 92149 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1311 | 75.44% | 24.56% |
| All Indica | 697 | 56.53% | 43.47% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 321 | 63.86% | 36.14% |
| Indica II | 198 | 56.57% | 43.43% |
| Indica Intermediate | 178 | 43.26% | 56.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000092149 | A->C | INTERGENIC | None |